Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peroxiredoxinEAJ18_15415Not AvailableNegative3106705 - 310730722264.5
acp phosphodiesteraseEAJ18_15420Not AvailableNegative3107512 - 310809323003.4
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaEAJ18_15425Not AvailablePositive3108186 - 310925639513.2
trna guanosine(34) transglycosylase tgtEAJ18_15430Not AvailablePositive3109311 - 311043842538.1
preprotein translocase subunit yajcEAJ18_15435Not AvailablePositive3110461 - 311079311802.8
protein translocase subunit secdEAJ18_15440Not AvailablePositive3110821 - 311266866438.9
protein translocase subunit secfEAJ18_15445Not AvailablePositive3112679 - 311365035268.6
voc family proteinEAJ18_15450Not AvailablePositive3113804 - 311416913102.7
yafy family transcriptional regulatorEAJ18_15455Not AvailablePositive3114185 - 311487726686.0
nucleoside-specific channel-forming protein tsxEAJ18_15460Not AvailableNegative3114921 - 311580533652.7

Displaying genes 3131 – 3140 of 4739 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.