Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5'-methylthioadenosine/s-adenosylhomocysteine nucleosidaseEAJ18_13065Not AvailablePositive2590700 - 259139824428.6
vitamin b12 abc transporter substrate-binding protein btufEAJ18_13070Not AvailablePositive2591391 - 259219129149.3
tric cation channel family proteinEAJ18_13075Not AvailablePositive2592228 - 259285122079.2
iron-sulfur cluster insertion protein erpaEAJ18_13080Not AvailableNegative2592918 - 259326212114.2
h(+)/cl(-) exchange transporter clcaEAJ18_13085Not AvailableNegative2593344 - 259476550331.0
glutamate-1-semialdehyde-2,1-aminomutaseEAJ18_13090Not AvailablePositive2594934 - 259621445487.0
fe(3+)-hydroxamate abc transporter permease fhubEAJ18_13095Not AvailableNegative2596326 - 259830870268.3
fe(3+)-hydroxamate abc transporter substrate-binding protein fhudEAJ18_13100Not AvailableNegative2598305 - 259919533319.6
fe3+-hydroxamate abc transporter atp-binding protein fhucEAJ18_13105Not AvailableNegative2599195 - 259999228967.3
ferrichrome porin fhuaEAJ18_13110Not AvailableNegative2600040 - 260221779727.7

Displaying genes 2671 – 2680 of 4739 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.