Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nickel abc transporter permease subunit nikcEAJ18_08515Not AvailablePositive1709431 - 171026430365.9
nickel import atp-binding protein nikdEAJ18_08520Not AvailablePositive1710264 - 171102826961.1
nickel import atp-binding protein nikeEAJ18_08525Not AvailablePositive1711025 - 171182529528.4
nickel-responsive transcriptional regulator nikrEAJ18_08530Not AvailablePositive1711838 - 171223915109.7
abc transporter permeaseEAJ18_08535Not AvailableNegative1712333 - 171345741093.3
abc transporter atp-binding protein/permeaseEAJ18_08540Not AvailableNegative1713457 - 1716195100760.0
hlyd family secretion proteinEAJ18_08545Not AvailableNegative1716192 - 171725938780.5
nad(p)/fad-dependent oxidoreductaseEAJ18_08550Not AvailableNegative1717581 - 171877443112.8
anion permeaseEAJ18_08555Not AvailablePositive1719005 - 172050453490.5
universal stress protein bEAJ18_08560Not AvailableNegative1720567 - 172090212953.0

Displaying genes 1981 – 1990 of 4739 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.