Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
intracellular growth attenuator protein igaaEAJ18_08000Not AvailablePositive1599256 - 160138879416.3
gmp/imp nucleotidaseEAJ18_08005Not AvailablePositive1601454 - 160212225201.1
ribosome-associated heat shock protein hsp15EAJ18_08010Not AvailablePositive1602133 - 160253415544.7
hsp33 family molecular chaperone hsloEAJ18_08015Not AvailablePositive1602559 - 160343732289.2
phosphoenolpyruvate carboxykinase (atp)EAJ18_08020Not AvailablePositive1603811 - 160543059693.6
two-component system sensor histidine kinase envzEAJ18_08025Not AvailableNegative1605483 - 160683550379.2
dna-binding response regulatorEAJ18_08030Not AvailableNegative1606832 - 160755127355.3
transcription elongation factor grebEAJ18_08035Not AvailablePositive1607778 - 160825118472.9
rna-binding transcriptional accessory proteinEAJ18_08040Not AvailablePositive1608350 - 161066584544.0
ferrous iron transporter aEAJ18_08050Not AvailablePositive1611040 - 16112678311.25

Displaying genes 1881 – 1890 of 4739 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.