Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-activated cytolysin | BCL90_4767 | Not Available | Negative | 5419713 - 5420687 | 36305.4 |
| peptide chain release factor 3 (brf-3) | BCL90_4768 | Not Available | Negative | 5420847 - 5422430 | 60084.5 |
| helix-turn-helix protein | BCL90_4769 | Not Available | Positive | 5423262 - 5425529 | 86491.0 |
| gxxexxy protein | BCL90_4770 | Not Available | Positive | 5425573 - 5425980 | 15709.5 |
| sprt-like family protein | BCL90_4771 | Not Available | Positive | 5426059 - 5426667 | 23777.7 |
| adenine deaminase | BCL90_4772 | Not Available | Negative | 5426823 - 5428460 | 60213.5 |
| 2-oxoisovalerate dehydrogenase e1 component | BCL90_4773 | Not Available | Negative | 5428554 - 5430530 | 73553.0 |
| l-lactate dehydrogenase complex protein lldf | BCL90_4774 | Not Available | Negative | 5430575 - 5431960 | 52168.8 |
| uncharacterized protein duf2281 | BCL90_4775 | Not Available | Negative | 5432096 - 5432302 | 8050.8 |
| zn-dependent m28 family amino/carboxypeptidase | BCL90_4776 | Not Available | Negative | 5432410 - 5434044 | 60171.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
