Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine38-40 synthase | BCL90_4547 | Not Available | Positive | 5162590 - 5163390 | 30943.4 |
| hypothetical protein | BCL90_4548 | Not Available | Positive | 5163427 - 5163873 | 16353.7 |
| hypothetical protein | BCL90_4549 | Not Available | Positive | 5163885 - 5164289 | 14665.8 |
| lipoprotein-releasing system permease protein | BCL90_4550 | Not Available | Negative | 5164343 - 5165563 | 46220.5 |
| uncharacterized protein ybbc (duf1343 family) | BCL90_4551 | Not Available | Positive | 5165740 - 5167008 | 46868.0 |
| hypothetical protein | BCL90_4552 | Not Available | Positive | 5167161 - 5167367 | 7699.99 |
| two-component system cheb/cher fusion protein | BCL90_4553 | Not Available | Negative | 5167411 - 5169258 | 70071.7 |
| dna topoisomerase-1 | BCL90_4554 | Not Available | Negative | 5169291 - 5170334 | 39533.7 |
| methionyl-trna formyltransferase | BCL90_4555 | Not Available | Positive | 5170441 - 5171334 | 32726.5 |
| branched-chain amino acid aminotransferase | BCL90_4556 | Not Available | Negative | 5171837 - 5172676 | 31726.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
