Pedobacter alluvionis strain DSM 19624

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter alluvionis strain DSM 19624 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile, indicating the absence of significant movement capabilities despite the presence of flagella. It exhibits psychrotolerant properties, with an optimal growth temperature of 16°C, allowing it to thrive in cooler environments, which is a notable trait for bacteria inhabiting cold ecosystems. This strain has a single replicon, which refers to the presence of one complete chromosome, and it does not form spores. These characteristics suggest a stable genetic framework and a reliance on vegetative growth for reproduction rather than sporulation, which is a common survival strategy for many bacteria in varying environmental conditions. The ecological insight from the traits of Pedobacter alluvionis strain DSM 19624 lies in its adaptation to cold environments. Its psychrotolerant nature enables it to occupy niches in soils and sediments where temperatures are consistently low, potentially influencing nutrient cycling and microbial community dynamics in such ecosystems. The ability to thrive in these cooler habitats may also suggest a role in the degradation of organic matter and biogeochemical processes in cold environments, highlighting its importance in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter alluvionis
Strainstrain DSM 19624

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter alluvionis strain DSM 19624
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter alluvionis strain DSM 19624 Ga0111684_109, whole genome

Gene Summary

Adenine Count

1859053 bp

Thymine Count

1859250 bp

Guanine Count

1162087 bp

Cytosine Count

1155672 bp

Genome Length

6037645 bp

Protein-coding Genes

4997 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospholipid/cholesterol/gamma-hch transport system permease proteinBCL90_4175Not AvailablePositive4710151 - 471092127676.6
phospholipid/cholesterol/gamma-hch transport system atp-binding proteinBCL90_4176Not AvailablePositive4710928 - 471167127679.5
phospholipid/cholesterol/gamma-hch transport system substrate-binding proteinBCL90_4177Not AvailablePositive4711683 - 471269036485.2
nucleotide-binding universal stress uspa family proteinBCL90_4178Not AvailablePositive4713150 - 471398631775.9
uncharacterized membrane protein yoak (upf0700 family)BCL90_4179Not AvailablePositive4714395 - 471513827983.7
dknyy family proteinBCL90_4180Not AvailableNegative4715237 - 471676958139.5
putative alpha-1,2-mannosidaseBCL90_4181Not AvailableNegative4717045 - 471919279907.0
alpha-l-fucosidase 2BCL90_4182Not AvailablePositive4719934 - 472220485737.4
hypothetical proteinBCL90_4183Not AvailableNegative4722725 - 47229197142.72
hypothetical proteinBCL90_4184Not AvailableNegative4722916 - 472410343656.4

Displaying genes 4121 – 4130 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.