Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sss family solute:na+ symporter | BCL90_3968 | Not Available | Negative | 4462406 - 4464073 | 60787.8 |
| d-xylose isomerase | BCL90_3969 | Not Available | Negative | 4464350 - 4465681 | 49847.3 |
| xylulokinase | BCL90_3970 | Not Available | Negative | 4465742 - 4467226 | 54143.3 |
| pp_03794 | BCL90_3971 | Not Available | Positive | 4467419 - 4467754 | Not Available |
| trna(adenine34) deaminase | BCL90_3972 | Not Available | Positive | 4468118 - 4468585 | 17370.9 |
| fe-mn family superoxide dismutase | BCL90_3973 | Not Available | Positive | 4469304 - 4469912 | 22385.4 |
| hypothetical protein | BCL90_3974 | Not Available | Positive | 4470011 - 4470472 | 17485.0 |
| lysr family hydrogen peroxide-inducible transcriptional activator | BCL90_3975 | Not Available | Negative | 4470747 - 4471679 | 35187.2 |
| gdp-l-fucose synthase | BCL90_3976 | Not Available | Negative | 4471814 - 4472740 | 34780.7 |
| trna (guanine-n7-)-methyltransferase | BCL90_3977 | Not Available | Positive | 4472854 - 4473504 | 25067.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
