Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter alluvionis strain DSM 19624
Accession NumberRCCK00000000.1
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | BCL90_0556 | Not Available | + | 714428 - 715435 | 38646.2 |
| lyttr family two component transcriptional regulator | BCL90_0557 | Not Available | + | 715513 - 716247 | 27772.7 |
| phosphoribosyl-atp pyrophosphohydrolase | BCL90_0558 | Not Available | + | 716771 - 717238 | 17654.9 |
| alpha/beta hydrolase family protein | BCL90_0559 | Not Available | + | 717257 - 718108 | 32123.7 |
| l-rhamnose-h+ transport protein | BCL90_0560 | Not Available | + | 718508 - 719602 | 39831.5 |
| rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | BCL90_0561 | Not Available | + | 719631 - 721751 | 76650.5 |
| l-rhamnose isomerase/sugar isomerase | BCL90_0562 | Not Available | + | 722130 - 723410 | 47226.2 |
| sugar (pentulose or hexulose) kinase | BCL90_0563 | Not Available | + | 723426 - 724811 | 52279.5 |
| regulatory gntr family protein | BCL90_0564 | Not Available | + | 724854 - 725885 | 39182.6 |
| snf2 family dna or rna helicase | BCL90_0565 | Not Available | + | 726293 - 729679 | 129849.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.