Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter alluvionis strain DSM 19624
Accession NumberRCCK00000000.1
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | BCL90_0429 | Not Available | + | 571577 - 572656 | 39248.3 |
| Ncrna_class:other | Not Available | Not Available | + | 571645 - 571720 | Not Available |
| glyceraldehyde 3-phosphate dehydrogenase | BCL90_0430 | Not Available | + | 572799 - 573794 | 35757.9 |
| putative membrane protein | BCL90_0431 | Not Available | - | 573784 - 574185 | 14634.2 |
| acetyltransferase (gnat) family protein | BCL90_0432 | Not Available | + | 574435 - 574872 | 16432.5 |
| phosphoglycerate kinase | BCL90_0433 | Not Available | + | 574879 - 576072 | 42732.4 |
| susd/ragb-like outer membrane lipoprotein | BCL90_0434 | Not Available | - | 576152 - 577729 | 58695.8 |
| Ncrna_class:other | Not Available | Not Available | + | 579513 - 579605 | Not Available |
| tonb-linked susc/raga family outer membrane protein | BCL90_0435 | Not Available | - | 577742 - 580894 | 113783.0 |
| putative iron-regulated membrane protein | BCL90_0436 | Not Available | - | 581650 - 583221 | 58557.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.