Pedobacter alluvionis strain DSM 19624

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter alluvionis strain DSM 19624 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments. The Gram-negative nature of P. alluvionis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and may confer specific advantages in its ecological niche. Given its aerobic requirement, P. alluvionis is likely to be involved in processes that occur in oxygen-rich environments, where it may play a role in the degradation of organic matter. The non-spore-forming characteristic suggests that this strain may rely on other survival strategies, such as the ability to rapidly reproduce or form biofilms in response to environmental stresses. An interesting perspective on Pedobacter alluvionis strain DSM 19624 is its potential contribution to nutrient cycling in freshwater sediments or soil environments. Its optimal growth temperature aligns with conditions commonly found in temperate ecosystems, which may influence microbial community dynamics and interactions within its habitat. Such traits highlight the bacterium's role in maintaining ecological balance and enhancing soil health through the breakdown of organic materials, although further studies are needed to establish its specific ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter alluvionis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter alluvionis strain DSM 19624

Accession NumberRCCK00000000.1

Gene Summary

Adenine Count

1859053 bp

Thymine Count

1859250 bp

Guanine Count

1162087 bp

Cytosine Count

1155672 bp

Genome Length

6037645 bp

Protein-coding Genes

4997 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
atp-dependent clp protease protease subunitBCL90_4515Not Available-5129467 - 513021027499.3
hypothetical proteinBCL90_4516Not Available-5130234 - 513050310907.3
dna-directed rna polymerase specialized sigma24 family proteinBCL90_4517Not Available-5130484 - 513104421358.9
arac-like dna-binding proteinBCL90_4518Not Available-5131596 - 513258837636.0
ubiquinone/menaquinone biosynthesis c-methylase ubieBCL90_4519Not Available+5132748 - 513336823534.0
azurinBCL90_4520Not Available-5134565 - 513659274638.8
hypothetical proteinBCL90_4521Not Available-5136600 - 513733426852.7
dna polymerase iii delta subunitBCL90_4522Not Available-5138156 - 513917538636.7
type i restriction and modification enzyme subunit r-like proteinBCL90_4523Not Available+5139389 - 513984717809.8
putative dehydrogenaseBCL90_4526Not Available-5140603 - 514179644321.4

Displaying genes 4441 – 4450 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites