Pedobacter alluvionis strain DSM 19624

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter alluvionis strain DSM 19624 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments. The Gram-negative nature of P. alluvionis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and may confer specific advantages in its ecological niche. Given its aerobic requirement, P. alluvionis is likely to be involved in processes that occur in oxygen-rich environments, where it may play a role in the degradation of organic matter. The non-spore-forming characteristic suggests that this strain may rely on other survival strategies, such as the ability to rapidly reproduce or form biofilms in response to environmental stresses. An interesting perspective on Pedobacter alluvionis strain DSM 19624 is its potential contribution to nutrient cycling in freshwater sediments or soil environments. Its optimal growth temperature aligns with conditions commonly found in temperate ecosystems, which may influence microbial community dynamics and interactions within its habitat. Such traits highlight the bacterium's role in maintaining ecological balance and enhancing soil health through the breakdown of organic materials, although further studies are needed to establish its specific ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter alluvionis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter alluvionis strain DSM 19624

Accession NumberRCCK00000000.1

Gene Summary

Adenine Count

1859053 bp

Thymine Count

1859250 bp

Guanine Count

1162087 bp

Cytosine Count

1155672 bp

Genome Length

6037645 bp

Protein-coding Genes

4997 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
arac-like dna-binding proteinBCL90_0363Not Available+496258 - 49723837741.9
helix-turn-helix proteinBCL90_0364Not Available+497242 - 49820436180.9
hypothetical proteinBCL90_0366Not Available-499348 - 49976415502.7
uncharacterized protein duf4237BCL90_0367Not Available-499775 - 50049126469.3
hypothetical proteinBCL90_0368Not Available-500852 - 50163429591.5
Trna-serNot AvailableNot Available+501956 - 502045Not Available
putative membrane protein ypha (doxx/surf4 family)BCL90_0370Not Available-502218 - 50266416606.9
Ncrna_class:otherNot AvailableNot Available+503409 - 503478Not Available
two component regulator with propeller domainBCL90_0371Not Available-503227 - 507209150763.0
tonb-linked susc/raga family outer membrane proteinBCL90_0372Not Available+508797 - 512000120325.0

Displaying genes 401 – 410 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites