Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-phosphate galactose phosphotransferase/putative colanic acid biosynthesis udp-glucose lipid carrier transferase | BCL90_4100 | Not Available | Positive | 4600833 - 4602224 | 54218.6 |
| protein involved in gliding motility remb | BCL90_4101 | Not Available | Positive | 4602377 - 4604002 | 61512.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | BCL90_4102 | Not Available | Negative | 4604228 - 4606375 | 78619.0 |
| condensin subunit scpa | BCL90_4103 | Not Available | Positive | 4606393 - 4607136 | 28656.7 |
| glycine hydroxymethyltransferase | BCL90_4104 | Not Available | Positive | 4607199 - 4608470 | 45892.6 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | BCL90_4105 | Not Available | Positive | 4608621 - 4610459 | 67744.0 |
| hypothetical protein | BCL90_4106 | Not Available | Negative | 4610863 - 4612236 | 50683.5 |
| comf family protein | BCL90_4107 | Not Available | Negative | 4612296 - 4612994 | 25943.8 |
| hypothetical protein | BCL90_4109 | Not Available | Positive | 4613911 - 4614210 | 10755.8 |
| gnt-i system high-affinity gluconate transporter | BCL90_4110 | Not Available | Negative | 4614695 - 4616014 | 46317.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
