Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hepn domain-containing protein | BCL90_2954 | Not Available | Positive | 3296353 - 3297252 | 34597.4 |
| hypothetical protein | BCL90_2955 | Not Available | Positive | 3297266 - 3298528 | 49756.9 |
| hypothetical protein | BCL90_2956 | Not Available | Positive | 3298659 - 3298889 | 8882.71 |
| trna(fmet)-specific endonuclease vapc | BCL90_2957 | Not Available | Positive | 3298876 - 3299268 | 14854.9 |
| site-specific recombinase xerd | BCL90_2958 | Not Available | Negative | 3299508 - 3300833 | 50360.9 |
| Trna-lys | Not Available | Not Available | Positive | 3301079 - 3301154 | Not Available |
| adp-ribose pyrophosphatase yjhb (nudix family) | BCL90_2960 | Not Available | Negative | 3301365 - 3302063 | 26935.8 |
| had superfamily hydrolase (tigr01509 family) | BCL90_2961 | Not Available | Negative | 3302067 - 3302738 | 24889.8 |
| aldose 1-epimerase | BCL90_2962 | Not Available | Positive | 3302936 - 3304087 | 41420.9 |
| l-lactate dehydrogenase (cytochrome) | BCL90_2963 | Not Available | Negative | 3304221 - 3305390 | 43115.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
