Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | BCL90_1347 | Not Available | Negative | 1558318 - 1559580 | 47592.8 |
| l-amino acid n-acyltransferase ynca | BCL90_1348 | Not Available | Negative | 1559582 - 1560049 | 17963.3 |
| hypothetical protein | BCL90_1349 | Not Available | Negative | 1560051 - 1560752 | 26479.0 |
| uncharacterized protein duf4296 | BCL90_1350 | Not Available | Positive | 1560822 - 1561379 | 20781.2 |
| dna mismatch repair protein muts2 | BCL90_1351 | Not Available | Positive | 1561381 - 1563759 | 89703.9 |
| glucose/arabinose dehydrogenase | BCL90_1352 | Not Available | Positive | 1564188 - 1565279 | 39747.4 |
| 3-oxoacid coa-transferase subunit a | BCL90_1353 | Not Available | Positive | 1565577 - 1566281 | 25526.7 |
| 3-oxoacid coa-transferase subunit b | BCL90_1354 | Not Available | Positive | 1566337 - 1566996 | 23462.0 |
| uridine kinase | BCL90_1355 | Not Available | Negative | 1567173 - 1567823 | 24913.8 |
| lysm repeat protein | BCL90_1356 | Not Available | Negative | 1567820 - 1569349 | 55863.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
