Pedobacter alluvionis strain DSM 19624

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter alluvionis strain DSM 19624 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments. The Gram-negative nature of P. alluvionis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and may confer specific advantages in its ecological niche. Given its aerobic requirement, P. alluvionis is likely to be involved in processes that occur in oxygen-rich environments, where it may play a role in the degradation of organic matter. The non-spore-forming characteristic suggests that this strain may rely on other survival strategies, such as the ability to rapidly reproduce or form biofilms in response to environmental stresses. An interesting perspective on Pedobacter alluvionis strain DSM 19624 is its potential contribution to nutrient cycling in freshwater sediments or soil environments. Its optimal growth temperature aligns with conditions commonly found in temperate ecosystems, which may influence microbial community dynamics and interactions within its habitat. Such traits highlight the bacterium's role in maintaining ecological balance and enhancing soil health through the breakdown of organic materials, although further studies are needed to establish its specific ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter alluvionis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter alluvionis strain DSM 19624

Accession NumberRCCK00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4997 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Major tail proteinBCL90_1650Not Available-1893545 - 1898001146614.0
Minor tail proteinBCL90_1651Not Available-1898107 - 189872721237.2
Minor tail proteinBCL90_1652Not Available-1898759 - 189937621412.3
Minor tail proteinBCL90_1653Not Available-1899401 - 190001220951.8
Cyanobacterial phosphoribosylglycinamide formyltransferaseBCL90_1654Not Available-1900019 - 190095734900.3
abc-type branched-subunit amino acid transport system substrate-binding proteinBCL90_1655Not Available-1900959 - 190208341427.8
PiucBCL90_1656Not Available-1902093 - 190280927299.6
CarbamoyltransferaseBCL90_1657Not Available+1903009 - 190471263310.5
Hypothetical proteinBCL90_1658Not Available+1904696 - 190589245394.3
phytanoyl-coa dioxygenase phyhBCL90_1659Not Available+1905895 - 190690839021.5

Displaying genes 1 – 10 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites