Flavobacterium limicola strain DSM 15094

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium limicola strain DSM 15094 is a psychrophilic, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitates motility in its aquatic environment. This strain thrives in freshwater habitats, underscoring its ecological specialization in cold, nutrient-rich environments. The strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in fluctuating freshwater conditions. The accession number for this strain is RBXA00000000.1, providing a reference point for further genomic studies and comparisons with related bacterial species. The psychrophilic nature of Flavobacterium limicola suggests that it plays a significant role in the biogeochemical processes of cold freshwater ecosystems. As a member of the Flavobacteriaceae family, it may contribute to the decomposition of organic materials and the cycling of nutrients, which are essential for maintaining the ecological balance in its habitat. The ability to thrive in low-temperature environments allows this strain to occupy a niche that may be less competitive, thus highlighting its importance in cold freshwater microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium limicola
Strainstrain DSM 15094

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium limicola strain DSM 15094
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangepsychrophilic
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium limicola strain DSM 15094 Ga0131128_112, whole

Gene Summary

Adenine Count

1085868 bp

Thymine Count

1097673 bp

Guanine Count

568297 bp

Cytosine Count

553481 bp

Genome Length

3306122 bp

Protein-coding Genes

2916 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
para-aminobenzoate synthetase component 1BC952_1566Not AvailablePositive1664468 - 166575449619.1
trna(ile)-lysidine synthaseBC952_1567Not AvailablePositive1665782 - 166709251129.8
thiol:disulfide interchange protein dsbdBC952_1568Not AvailablePositive1667092 - 166912574826.4
putative amino acid racemaseBC952_1569Not AvailableNegative1669270 - 167034340229.1
acetyltransferase (gnat) family proteinBC952_1570Not AvailableNegative1670379 - 167081316379.9
hypothetical proteinBC952_1571Not AvailablePositive1671397 - 167324471107.8
ammonium transporterBC952_1572Not AvailableNegative1673488 - 167480446655.3
ph (pleckstrin homology) domain-containing proteinBC952_1573Not AvailableNegative1675133 - 167551014205.3
imidazolonepropionase-like amidohydrolaseBC952_1574Not AvailableNegative1675520 - 167682747367.8
imidazolonepropionase-like amidohydrolaseBC952_1575Not AvailableNegative1676899 - 1679889111483.0

Displaying genes 1591 – 1600 of 3071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.