Flavobacterium limicola strain DSM 15094

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium limicola strain DSM 15094 is a psychrophilic, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitates motility in its aquatic environment. This strain thrives in freshwater habitats, underscoring its ecological specialization in cold, nutrient-rich environments. The strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in fluctuating freshwater conditions. The accession number for this strain is RBXA00000000.1, providing a reference point for further genomic studies and comparisons with related bacterial species. The psychrophilic nature of Flavobacterium limicola suggests that it plays a significant role in the biogeochemical processes of cold freshwater ecosystems. As a member of the Flavobacteriaceae family, it may contribute to the decomposition of organic materials and the cycling of nutrients, which are essential for maintaining the ecological balance in its habitat. The ability to thrive in low-temperature environments allows this strain to occupy a niche that may be less competitive, thus highlighting its importance in cold freshwater microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium limicola
Strainstrain DSM 15094

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium limicola strain DSM 15094
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangepsychrophilic
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium limicola strain DSM 15094 Ga0131128_112, whole

Gene Summary

Adenine Count

1085868 bp

Thymine Count

1097673 bp

Guanine Count

568297 bp

Cytosine Count

553481 bp

Genome Length

3306122 bp

Protein-coding Genes

2916 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
curli assembly protein csgeBC952_1332Not AvailablePositive1407088 - 140781927864.7
curli production assembly/transport component csgfBC952_1333Not AvailablePositive1407931 - 140834115244.8
curli production assembly/transport component csggBC952_1334Not AvailablePositive1408473 - 140984951185.0
tol biopolymer transport system componentBC952_1335Not AvailablePositive1409920 - 141140154836.3
phosphoribosylformylglycinamidine cyclo-ligaseBC952_1336Not AvailablePositive1411631 - 141280942859.1
hypothetical proteinBC952_1337Not AvailablePositive1412864 - 141322313967.5
Ncrna_class:otherNot AvailableNot AvailablePositive1413234 - 1413376Not Available
zinc proteaseBC952_1339Not AvailableNegative1413416 - 1416211104029.0
rimj/riml family protein n-acetyltransferaseBC952_1340Not AvailablePositive1416493 - 141708923213.7
pas domain s-box-containing proteinBC952_1341Not AvailableNegative1417122 - 141927582411.7

Displaying genes 1361 – 1370 of 3071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.