Parabacteroides merdae strain OM06-16AC

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain OM06-16AC is a Gram-negative, anaerobic bacterium. As a member of the genus Parabacteroides, this strain is characterized by its inability to survive in the presence of oxygen, reflecting its adaptation to anaerobic environments, which are often found in the gastrointestinal tracts of various hosts. The Gram-negative nature of Parabacteroides merdae strain OM06-16AC indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this classification. This structural feature may play a role in the bacterium's interactions within its ecological niche, potentially influencing its resistance to certain antimicrobial agents and its overall survival strategy in anaerobic conditions. Understanding the traits of Parabacteroides merdae strain OM06-16AC provides insight into the diverse metabolic capabilities of anaerobic bacteria and their roles in complex microbial communities. Given its anaerobic requirement, this strain likely contributes to the fermentation processes within its environment, potentially participating in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health and gut homeostasis. This emphasizes the importance of anaerobic bacteria in maintaining microbial balance and nutrient cycling in anaerobic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain OM06-16AC

Accession NumberQSTY00000000.1

Gene Summary

Adenine Count

1268873 bp

Thymine Count

1268892 bp

Guanine Count

1050182 bp

Cytosine Count

1037263 bp

Genome Length

4625443 bp

Protein-coding Genes

3725 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Dna-binding proteinDXB85_14050Not Available-3298722 - 329908413388.2
Hypothetical proteinDXB85_14055Not Available-3299096 - 329939511862.2
Phage portal proteinDXB85_14060Not Available-3299544 - 330103156812.9
Phage terminase large subunitDXB85_14065Not Available-3301043 - 330231148249.0
Transposase/terminase small subunitDXB85_14070Not Available-3302308 - 330282319374.8
Parb-like nucleaseDXB85_14075Not Available-3303227 - 330396728204.4
Adenine nucleotide alpha hydrolase-like proteinDXB85_14080Not Available-3304177 - 330485126732.0
Hypothetical proteinDXB85_14085Not Available-3305056 - 330544514785.7
Trna,type:val,anti_codon:gac;Not AvailableNot Available+3305476 - 3305551Not Available
duf3873 domain-containing proteinDXB85_14095Not Available-3305623 - 33058298076.59

Displaying genes 1 – 10 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites