Parabacteroides merdae strain OM06-16AC

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain OM06-16AC is a Gram-negative, rod-shaped bacterium that inhabits the gastrointestinal tract of Homo sapiens, contributing to the gut microbiome. This strain is characterized as an anaerobe, indicating that it thrives in oxygen-free environments, which is typical for many gut-associated microbes. The presence of flagella suggests that P. merdae has the capability for motility, potentially aiding in its colonization and interaction within the complex gut ecosystem. P. merdae strain OM06-16AC is notable for having a single replicon, which may reflect its genomic organization and evolutionary dynamics within the gut environment. It has been linked to the health effect termed OSA (obesity-associated gut microbiota), highlighting its potential influence on metabolic processes and overall health in its human host. Given its role in the gastrointestinal tract, P. merdae strain OM06-16AC may play a significant part in maintaining gut homeostasis and influencing host health through various microbial interactions. The understanding of its functional contributions to the gut microbiome can offer insights into the complex relationships between gut bacteria and host physiology, particularly concerning conditions like obesity. Further research on this strain could elucidate its specific roles and mechanisms, enhancing our comprehension of microbial impacts on human health. The accession number for this strain is QSTY00000000.1, providing a reference for future genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain OM06-16AC

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain OM06-16AC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain OM06-16AC OM06-16AC.Scaf67, whole

Gene Summary

Adenine Count

1268873 bp

Thymine Count

1268892 bp

Guanine Count

1050182 bp

Cytosine Count

1037263 bp

Genome Length

4625443 bp

Protein-coding Genes

3725 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m56 family peptidaseDXB85_13470Not AvailablePositive3155897 - 315710545397.9
duf4934 domain-containing proteinDXB85_13475Not AvailablePositive3157113 - 315835145676.7
gfo/idh/moca family oxidoreductaseDXB85_13480Not AvailablePositive3158454 - 315943136402.8
glycoside hydrolaseDXB85_13485Not AvailableNegative3159509 - 316200493709.0
duf3858 domain-containing proteinDXB85_13490Not AvailableNegative3162195 - 316388962490.3
duf3857 domain-containing proteinDXB85_13495Not AvailableNegative3163927 - 316589473724.9
o-succinylbenzoic acid--coa ligaseDXB85_13500Not AvailableNegative3165948 - 316706341330.4
o-succinylbenzoate synthaseDXB85_13505Not AvailableNegative3167038 - 316808739033.7
1,4-dihydroxy-2-naphthoyl-coa synthaseDXB85_13510Not AvailableNegative3168100 - 316892430431.6
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseDXB85_13515Not AvailableNegative3168962 - 317062662491.1

Displaying genes 2611 – 2620 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total