Agathobacter rectalis strain OM08-12AT

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain OM08-12AT is a Gram-positive, non-motile anaerobic bacterium characterized by its rod shape. It is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is typical for many gut-associated microbes. This strain is mesophilic, with an optimal growth temperature of 37°C, making it well-suited for survival in the human body, as it has been identified among the microbiota of Homo sapiens. The strain has a single replicon and a single membrane, which is consistent with many members of its genus. Notably, Agathobacter rectalis strain OM08-12AT does not form spores, suggesting a strategy for persistence that relies on other mechanisms rather than sporulation. In terms of ecological significance, the presence of Agathobacter rectalis in the human gut microbiota contributes to the complex community of microorganisms that play crucial roles in digestion, metabolism, and immune system modulation. As a free-living organism, it interacts with the human host and other microbial species, potentially influencing gut health and disease states. Understanding the traits of Agathobacter rectalis strain OM08-12AT can provide insights into its role in maintaining gut homeostasis and its potential implications in human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain OM08-12AT

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain OM08-12AT
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain OM08-12AT OM08-12AT.Scaf127, whole

Gene Summary

Adenine Count

982441 bp

Thymine Count

987568 bp

Guanine Count

675635 bp

Cytosine Count

704305 bp

Genome Length

3350682 bp

Protein-coding Genes

3073 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
elongation factor tsDXC13_00385Not AvailablePositive81366 - 8245138795.3
polysaccharide deacetylaseDXC13_00390Not AvailablePositive82596 - 8355234941.9
polymer-forming cytoskeletal proteinDXC13_00395Not AvailablePositive83576 - 8437928035.6
ump kinaseDXC13_00400Not AvailablePositive84382 - 8507725312.6
ribosome-recycling factorDXC13_00405Not AvailablePositive85111 - 8566520705.8
isoprenyl transferaseDXC13_00410Not AvailablePositive85821 - 8654627407.4
phosphatidate cytidylyltransferaseDXC13_00415Not AvailablePositive86546 - 8734929732.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDXC13_00420Not AvailablePositive87434 - 8857641520.5
rip metalloprotease rsepDXC13_00425Not AvailablePositive88588 - 8962538193.1
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseDXC13_00430Not AvailablePositive89652 - 9069836901.2

Displaying genes 81 – 90 of 3138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.