Ligilactobacillus ruminis strain TF10-9AT

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Ligilactobacillus

Description

Ligilactobacillus ruminis strain TF10-9AT is a Gram-positive bacterium predominantly found in the human gut. This strain exhibits a rod shape and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Notably, it possesses flagella, which may contribute to its motility within the gut ecosystem. In addition to its presence in humans (Homo sapiens), Ligilactobacillus ruminis strain TF10-9AT has been identified in other hosts, including Bos taurus (cattle) and Aves (birds). This suggests a broader ecological relevance of this strain across different species, potentially highlighting its role in gut health and microbiota composition in various hosts. The strain is characterized by a single replicon, which may be indicative of its genomic structure and stability. The accession number for this strain is QSQR00000000.1, providing a reference for further genomic studies. The presence of Ligilactobacillus ruminis strain TF10-9AT in diverse hosts underscores its potential significance in microbial interactions within the gut. Its ability to adapt to different oxygen conditions and its motility may facilitate its function in digestion and the maintenance of gut homeostasis. Understanding the ecological roles of such strains can provide insights into their contribution to host health and the dynamics of gut microbiomes across different species.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLigilactobacillus
SpeciesLigilactobacillus ruminis
Strainstrain TF10-9AT

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Ligilactobacillus ruminis strain TF10-9AT
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathuman gut
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ligilactobacillus ruminis strain TF10-9AT TF10-9AT.Scaf24, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2024 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lpxtg cell wall anchor domain-containing proteinDXD09_01050Not AvailableNegative194766 - 19593842834.1
hypothetical proteinDXD09_01055Not AvailableNegative195941 - 199366129252.0
branched-chain amino acid aminotransferaseDXD09_01060Not AvailablePositive200699 - 20173638191.2
pts sugar transporter subunit iicDXD09_01065Not AvailablePositive201940 - 20303137384.0
universal stress proteinDXD09_01070Not AvailableNegative203389 - 20386517703.2
deoxynucleoside kinaseDXD09_01075Not AvailableNegative203968 - 20471128843.6
nucleoside 2-deoxyribosyltransferaseDXD09_01080Not AvailablePositive204950 - 20542618154.4
vitamin b12-binding proteinDXD09_01085Not AvailablePositive205527 - 2056494567.61
hypothetical proteinDXD09_01090Not AvailableNegative206080 - 2062988221.55
transcriptional regulatorDXD09_01095Not AvailablePositive206352 - 2065828707.29

Displaying genes 271 – 280 of 2136 in total

Metabolites

176 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da

Displaying 1–10 of 176 metabolites

Health Effects

No health effects information available for this bacterium.