Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW921_02440 | Not Available | Positive | 509632 - 512961 | 126909.0 |
| hypothetical protein | DW921_02445 | Not Available | Negative | 513300 - 513956 | 25621.2 |
| signal peptidase i | DW921_02450 | Not Available | Negative | 513988 - 514869 | 32621.1 |
| s26 family signal peptidase | DW921_02455 | Not Available | Negative | 514910 - 516334 | 55061.2 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DW921_02460 | Not Available | Negative | 516337 - 517092 | 27178.3 |
| duf2851 family protein | DW921_02465 | Not Available | Positive | 517175 - 518449 | 49481.1 |
| pp_00463 | DW921_02470 | Not Available | Negative | 518460 - 519386 | Not Available |
| acyl-coa thioesterase | DW921_02475 | Not Available | Positive | 519517 - 519924 | 15686.9 |
| dna-protecting protein dpra | DW921_02480 | Not Available | Positive | 519921 - 521036 | 41180.8 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | DW921_02485 | Not Available | Negative | 521151 - 521906 | 27442.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


