Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i methionyl aminopeptidase | DW921_01935 | Not Available | Negative | 404417 - 405217 | 29192.2 |
| preprotein translocase subunit secy | DW921_01940 | Not Available | Negative | 405229 - 406575 | 48933.1 |
| 50s ribosomal protein l15 | DW921_01945 | Not Available | Negative | 406580 - 407026 | 15598.0 |
| 50s ribosomal protein l30 | DW921_01950 | Not Available | Negative | 407057 - 407233 | 6477.19 |
| 30s ribosomal protein s5 | DW921_01955 | Not Available | Negative | 407245 - 407763 | 17983.1 |
| 50s ribosomal protein l18 | DW921_01960 | Not Available | Negative | 407767 - 408108 | 12545.4 |
| 50s ribosomal protein l6 | DW921_01965 | Not Available | Negative | 408130 - 408699 | 20836.5 |
| 30s ribosomal protein s8 | DW921_01970 | Not Available | Negative | 408717 - 409112 | 14510.0 |
| 30s ribosomal protein s14 | DW921_01975 | Not Available | Negative | 409168 - 409467 | 11119.8 |
| 50s ribosomal protein l5 | DW921_01980 | Not Available | Negative | 409474 - 410031 | 20862.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


