Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor grea | DW921_01885 | Not Available | Negative | 396367 - 396831 | 16704.3 |
| duf4369 domain-containing protein | DW921_01890 | Not Available | Negative | 397041 - 398192 | 42943.1 |
| polyribonucleotide nucleotidyltransferase | DW921_01895 | Not Available | Positive | 398474 - 400633 | 79465.7 |
| 50s ribosomal protein l17 | DW921_01900 | Not Available | Negative | 401034 - 401522 | 18082.7 |
| dna-directed rna polymerase subunit alpha | DW921_01905 | Not Available | Negative | 401526 - 402518 | 37549.1 |
| 30s ribosomal protein s4 | DW921_01910 | Not Available | Negative | 402530 - 403135 | 22548.3 |
| 30s ribosomal protein s11 | DW921_01915 | Not Available | Negative | 403251 - 403640 | 13894.8 |
| 30s ribosomal protein s13 | DW921_01920 | Not Available | Negative | 403652 - 404032 | 14135.3 |
| 50s ribosomal protein l36 | DW921_01925 | Not Available | Negative | 404066 - 404182 | 4586.82 |
| translation initiation factor if-1 | DW921_01930 | Not Available | Negative | 404197 - 404415 | 8235.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


