Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase family protein | DW921_13865 | Not Available | Negative | 3232231 - 3234159 | 72963.0 |
| hypothetical protein | DW921_13870 | Not Available | Negative | 3234143 - 3235336 | 46530.4 |
| tonb-dependent receptor | DW921_13875 | Not Available | Negative | 3235341 - 3237653 | 88366.4 |
| pdz domain-containing protein | DW921_13880 | Not Available | Positive | 3238132 - 3239793 | 62640.1 |
| mate family efflux transporter | DW921_13885 | Not Available | Positive | 3239880 - 3241253 | 50088.3 |
| hypothetical protein | DW921_13890 | Not Available | Negative | 3241456 - 3241653 | 7482.41 |
| duf3857 domain-containing protein | DW921_13895 | Not Available | Positive | 3242239 - 3244149 | 71949.8 |
| duf3857 domain-containing protein | DW921_13900 | Not Available | Positive | 3244183 - 3245820 | 59575.2 |
| blai/meci/copy family transcriptional regulator | DW921_13905 | Not Available | Positive | 3246068 - 3246442 | 14498.3 |
| hypothetical protein | DW921_13910 | Not Available | Positive | 3246426 - 3248099 | 64417.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


