Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate dehydrogenase | DW921_04855 | Not Available | Positive | 1076746 - 1077762 | 37764.4 |
| mbl fold metallo-hydrolase | DW921_04860 | Not Available | Positive | 1077801 - 1078577 | 29048.2 |
| endonuclease iii | DW921_04865 | Not Available | Negative | 1078600 - 1079250 | 24491.1 |
| magnesium and cobalt transport protein cora | DW921_04870 | Not Available | Negative | 1079354 - 1080394 | 40362.0 |
| 4fe-4s dicluster domain-containing protein | DW921_04875 | Not Available | Negative | 1080407 - 1081267 | 32039.0 |
| vut family protein | DW921_04880 | Not Available | Positive | 1081592 - 1082281 | 25112.6 |
| 7-cyano-7-deazaguanine synthase quec | DW921_04885 | Not Available | Positive | 1082311 - 1082979 | 24859.7 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DW921_04890 | Not Available | Positive | 1082984 - 1083439 | 17914.4 |
| dna polymerase iii subunit gamma/tau | DW921_04895 | Not Available | Negative | 1083461 - 1085341 | 69845.6 |
| septum formation initiator family protein | DW921_04900 | Not Available | Positive | 1085513 - 1085818 | 12408.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


