Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_04805 | Not Available | Positive | 1067736 - 1067978 | 9288.34 |
| thymidylate synthase | DW921_04810 | Not Available | Positive | 1068045 - 1068683 | 24575.8 |
| dna adenine methylase | DW921_04815 | Not Available | Positive | 1068680 - 1069540 | 33162.1 |
| hypothetical protein | DW921_04820 | Not Available | Negative | 1069627 - 1070157 | 20819.1 |
| Trna-ser | Not Available | Not Available | Positive | 1070568 - 1070655 | Not Available |
| hypothetical protein | DW921_04830 | Not Available | Positive | 1071037 - 1072173 | 42645.1 |
| 6-bladed beta-propeller | DW921_04835 | Not Available | Positive | 1072191 - 1073387 | 44609.3 |
| mfs transporter | DW921_04840 | Not Available | Negative | 1073394 - 1074593 | 43703.7 |
| phenylalanine--trna ligase subunit alpha | DW921_04845 | Not Available | Negative | 1074678 - 1075697 | 38586.1 |
| duf4348 domain-containing protein | DW921_04850 | Not Available | Positive | 1075761 - 1076708 | 37401.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


