Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_04600 | Not Available | Positive | 1029589 - 1029855 | 9878.74 |
| hypothetical protein | DW921_04605 | Not Available | Positive | 1029917 - 1030297 | 14625.5 |
| hypothetical protein | DW921_04610 | Not Available | Positive | 1030309 - 1032414 | 81024.0 |
| atp-binding protein | DW921_04615 | Not Available | Positive | 1032451 - 1033332 | 32770.4 |
| hypothetical protein | DW921_04620 | Not Available | Positive | 1033329 - 1033586 | 9723.77 |
| hypothetical protein | DW921_04625 | Not Available | Positive | 1033555 - 1034217 | 25328.6 |
| rna polymerase subunit sigma | DW921_04630 | Not Available | Positive | 1034198 - 1034419 | 8807.68 |
| duf4406 domain-containing protein | DW921_04635 | Not Available | Positive | 1034419 - 1034889 | 17834.2 |
| hypothetical protein | DW921_04640 | Not Available | Positive | 1034908 - 1035141 | 8993.88 |
| hypothetical protein | DW921_04645 | Not Available | Positive | 1035143 - 1035565 | 16525.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


