Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine:cation symporter family protein | DW921_04550 | Not Available | Negative | 1021033 - 1022433 | 51136.7 |
| atp-binding protein | DW921_04555 | Not Available | Negative | 1022434 - 1023084 | 24809.9 |
| serine dehydratase subunit alpha family protein | DW921_04560 | Not Available | Negative | 1023124 - 1024419 | 46120.9 |
| duf255 domain-containing protein | DW921_04565 | Not Available | Negative | 1024429 - 1026438 | 74103.2 |
| sigma-70 family rna polymerase sigma factor | DW921_04570 | Not Available | Negative | 1026695 - 1027015 | 12763.8 |
| hypothetical protein | DW921_04575 | Not Available | Positive | 1027343 - 1027585 | 8616.62 |
| hypothetical protein | DW921_04580 | Not Available | Positive | 1027625 - 1027807 | 6803.6 |
| lexa family transcriptional regulator | DW921_04585 | Not Available | Negative | 1027994 - 1028698 | 26252.4 |
| dna-directed rna polymerase subunit beta | DW921_04590 | Not Available | Positive | 1028814 - 1029029 | 7960.58 |
| hypothetical protein | DW921_04595 | Not Available | Positive | 1029051 - 1029443 | 15251.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


