Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DW921_04440 | Not Available | Negative | 996589 - 997104 | 20317.4 |
| ion transporter | DW921_04445 | Not Available | Negative | 997446 - 998351 | 35221.6 |
| tolc family protein | DW921_04450 | Not Available | Negative | 998491 - 999855 | 50125.2 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW921_04455 | Not Available | Negative | 999884 - 1003018 | 113576.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_04460 | Not Available | Negative | 1003041 - 1004165 | 40630.5 |
| hypothetical protein | DW921_04465 | Not Available | Positive | 1004427 - 1005227 | 30541.0 |
| hypothetical protein | DW921_04470 | Not Available | Negative | 1005488 - 1006489 | 38237.6 |
| recq family atp-dependent dna helicase | DW921_04485 | Not Available | Negative | 1008501 - 1010402 | 73123.0 |
| single-stranded-dna-specific exonuclease recj | DW921_04490 | Not Available | Negative | 1010405 - 1012126 | 65020.8 |
| aminopeptidase | DW921_04495 | Not Available | Negative | 1012328 - 1013521 | 44635.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


