Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | DW921_04390 | Not Available | Negative | 979237 - 980376 | 42519.0 |
| hypothetical protein | DW921_04395 | Not Available | Negative | 980387 - 981475 | 39567.6 |
| tonb-dependent receptor | DW921_04400 | Not Available | Negative | 981490 - 983505 | 76465.3 |
| beta-n-acetylhexosaminidase | DW921_04405 | Not Available | Negative | 984184 - 986502 | 86121.1 |
| beta-n-acetylhexosaminidase | DW921_04410 | Not Available | Positive | 986622 - 988589 | 73968.4 |
| duf4976 domain-containing protein | DW921_04415 | Not Available | Positive | 988635 - 990221 | 62038.7 |
| fad-binding protein | DW921_04420 | Not Available | Negative | 990341 - 992002 | 60744.8 |
| duf4249 domain-containing protein | DW921_04425 | Not Available | Negative | 992131 - 993111 | 37531.9 |
| tonb-dependent receptor | DW921_04430 | Not Available | Negative | 993116 - 995707 | 98845.7 |
| duf4974 domain-containing protein | DW921_04435 | Not Available | Negative | 995704 - 996516 | 31084.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


