Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_04340 | Not Available | Negative | 970272 - 970649 | 14769.5 |
| rna polymerase sigma factor | DW921_04345 | Not Available | Negative | 970646 - 971200 | 21755.8 |
| hypothetical protein | DW921_04350 | Not Available | Positive | 971401 - 971814 | 15358.2 |
| glucose/galactose mfs transporter | DW921_04355 | Not Available | Negative | 971924 - 973084 | 41574.0 |
| potassium/proton antiporter | DW921_04360 | Not Available | Negative | 973464 - 974924 | 53368.9 |
| chromosome partitioning protein parb | DW921_04365 | Not Available | Negative | 974949 - 975494 | 20661.9 |
| duf3440 domain-containing protein | DW921_04370 | Not Available | Negative | 975485 - 976783 | 52183.7 |
| hypothetical protein | DW921_04375 | Not Available | Negative | 976749 - 977180 | 16793.1 |
| abc transporter atp-binding protein | DW921_04380 | Not Available | Negative | 977214 - 978218 | 37196.8 |
| iron abc transporter permease | DW921_04385 | Not Available | Negative | 978215 - 979240 | 35330.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


