Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DW921_04290 | Not Available | Negative | 959353 - 960177 | 31273.7 |
| helicase | DW921_04295 | Not Available | Positive | 960306 - 962180 | 72166.0 |
| transporter | DW921_04300 | Not Available | Positive | 962262 - 963860 | 56612.7 |
| mechanosensitive ion channel family protein | DW921_04305 | Not Available | Negative | 963838 - 965040 | 45807.6 |
| duf4891 domain-containing protein | DW921_04310 | Not Available | Positive | 965112 - 965513 | 15299.8 |
| tlpa family protein disulfide reductase | DW921_04315 | Not Available | Positive | 965513 - 966031 | 19402.2 |
| electron transfer flavoprotein beta subunit/fixa family protein | DW921_04320 | Not Available | Positive | 966137 - 967024 | 31547.9 |
| electron transfer flavoprotein subunit alpha/fixb family protein | DW921_04325 | Not Available | Positive | 967029 - 968048 | 37016.7 |
| acyl-coa dehydrogenase | DW921_04330 | Not Available | Positive | 968048 - 969757 | 63964.9 |
| type ii toxin-antitoxin system hicb family antitoxin | DW921_04335 | Not Available | Positive | 969965 - 970150 | 7058.98 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


