Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DW921_04235 | Not Available | Positive | 945260 - 947194 | 73626.3 |
| m13 family peptidase | DW921_04240 | Not Available | Positive | 947217 - 949253 | 75901.5 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DW921_04245 | Not Available | Negative | 949514 - 950731 | 46274.2 |
| hypothetical protein | DW921_04250 | Not Available | Negative | 950814 - 951707 | 33945.0 |
| phosphonoacetaldehyde hydrolase | DW921_04260 | Not Available | Positive | 953396 - 954196 | 29725.1 |
| 2-aminoethylphosphonate--pyruvate transaminase | DW921_04265 | Not Available | Positive | 954222 - 955313 | 40888.1 |
| duf2027 domain-containing protein | DW921_04270 | Not Available | Positive | 955499 - 956551 | 39963.9 |
| paai family thioesterase | DW921_04275 | Not Available | Positive | 956557 - 956967 | 14764.7 |
| mate family efflux transporter | DW921_04280 | Not Available | Positive | 956987 - 958342 | 48366.6 |
| duf4435 domain-containing protein | DW921_04285 | Not Available | Negative | 958343 - 959341 | 39284.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


