Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | DW921_04185 | Not Available | Positive | 933818 - 935368 | 57582.1 |
| 3-isopropylmalate dehydrogenase | DW921_04190 | Not Available | Positive | 935417 - 936478 | 39091.0 |
| peptide-methionine (s)-s-oxide reductase | DW921_04195 | Not Available | Negative | 936592 - 937077 | 18444.5 |
| tetratricopeptide repeat protein | DW921_04200 | Not Available | Positive | 937258 - 938079 | 31363.1 |
| dna helicase recq | DW921_04205 | Not Available | Negative | 938112 - 939938 | 69301.6 |
| arac family transcriptional regulator | DW921_04210 | Not Available | Positive | 940154 - 940621 | 18348.0 |
| dihydrofolate reductase | DW921_04215 | Not Available | Positive | 940633 - 942606 | 74916.6 |
| dna alkylation repair protein | DW921_04220 | Not Available | Positive | 942647 - 943321 | 25825.3 |
| transcriptional repressor | DW921_04225 | Not Available | Positive | 943375 - 943836 | 18102.8 |
| adenylosuccinate synthase | DW921_04230 | Not Available | Positive | 943856 - 945130 | 46847.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


