Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW921_04135 | Not Available | Positive | 925025 - 925723 | 26771.5 |
| marr family transcriptional regulator | DW921_04140 | Not Available | Negative | 926109 - 926555 | 17344.2 |
| 30s ribosomal protein s6 | DW921_04145 | Not Available | Positive | 926940 - 927287 | 13544.4 |
| 30s ribosomal protein s18 | DW921_04150 | Not Available | Positive | 927290 - 927559 | 10561.2 |
| 50s ribosomal protein l9 | DW921_04155 | Not Available | Positive | 927579 - 928028 | 16323.1 |
| nicotinate phosphoribosyltransferase | DW921_04160 | Not Available | Positive | 928273 - 929448 | 45627.4 |
| hypothetical protein | DW921_04165 | Not Available | Negative | 929565 - 929849 | 10843.2 |
| 2-isopropylmalate synthase | DW921_04170 | Not Available | Positive | 930266 - 931762 | 54665.4 |
| 3-isopropylmalate dehydratase large subunit | DW921_04175 | Not Available | Positive | 931767 - 933161 | 50613.9 |
| 3-isopropylmalate dehydratase small subunit | DW921_04180 | Not Available | Positive | 933190 - 933792 | 22664.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


