Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW921_04035 | Not Available | Positive | 899123 - 903169 | 150708.0 |
| dna polymerase iv | DW921_04040 | Not Available | Negative | 903280 - 904374 | 41556.1 |
| threonylcarbamoyl-amp synthase | DW921_04045 | Not Available | Positive | 904474 - 905040 | 20931.2 |
| cbs domain-containing protein | DW921_04050 | Not Available | Positive | 905056 - 906858 | 67043.1 |
| methionyl-trna formyltransferase | DW921_04055 | Not Available | Positive | 906878 - 907849 | 36356.4 |
| sigma-70 family rna polymerase sigma factor | DW921_04060 | Not Available | Positive | 907930 - 908475 | 20863.2 |
| port family protein | DW921_04065 | Not Available | Positive | 908479 - 909771 | 48391.1 |
| ribulose-phosphate 3-epimerase | DW921_04070 | Not Available | Positive | 910068 - 910727 | 23917.5 |
| comec family competence protein | DW921_04075 | Not Available | Positive | 910780 - 912729 | 72420.0 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DW921_04080 | Not Available | Positive | 912781 - 913818 | 38983.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


