Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 878919 - 878995 | Not Available |
| hypothetical protein | DW921_03990 | Not Available | Positive | 884551 - 885408 | 32709.2 |
| sensor histidine kinase | DW921_03995 | Not Available | Negative | 885745 - 887055 | 50165.9 |
| insulinase family protein | DW921_04000 | Not Available | Positive | 887218 - 890037 | 106308.0 |
| dna repair protein rada | DW921_04005 | Not Available | Negative | 890167 - 891540 | 50087.0 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DW921_04010 | Not Available | Positive | 892039 - 894471 | 88541.4 |
| cofactor-independent phosphoglycerate mutase | DW921_04015 | Not Available | Positive | 894501 - 895715 | 44513.4 |
| threonine synthase | DW921_04020 | Not Available | Positive | 895746 - 897047 | 48348.7 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DW921_04025 | Not Available | Positive | 897217 - 897975 | 29593.2 |
| mrp family atp-binding protein | DW921_04030 | Not Available | Positive | 897984 - 899084 | 39524.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


