Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4301 family protein | DW921_03865 | Not Available | Negative | 855804 - 857324 | 56798.9 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW921_03870 | Not Available | Positive | 857459 - 859675 | 84516.2 |
| duf1573 domain-containing protein | DW921_03875 | Not Available | Positive | 859762 - 860157 | 14216.3 |
| hypothetical protein | DW921_03880 | Not Available | Negative | 860267 - 860524 | 9449.13 |
| 30s ribosomal protein s16 | DW921_03885 | Not Available | Negative | 860576 - 861124 | 19654.2 |
| alpha/beta hydrolase | DW921_03890 | Not Available | Negative | 861231 - 862082 | 31433.3 |
| oligopeptide transporter, opt family | DW921_03895 | Not Available | Negative | 862104 - 864092 | 70018.4 |
| is66 family transposase | DW921_03900 | Not Available | Negative | 864391 - 866010 | 62035.6 |
| is66 family insertion sequence hypothetical protein | DW921_03905 | Not Available | Negative | 866086 - 866433 | 13451.5 |
| hypothetical protein | DW921_03910 | Not Available | Negative | 866438 - 866772 | 12562.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


