Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_03815 | Not Available | Negative | 840933 - 841316 | 14879.6 |
| acrb/acrd/acrf family protein | DW921_03820 | Not Available | Negative | 841532 - 844792 | 123411.0 |
| tolc family protein | DW921_03825 | Not Available | Negative | 844803 - 846290 | 56931.6 |
| acrb/acrd/acrf family protein | DW921_03830 | Not Available | Negative | 846271 - 849351 | 115851.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_03835 | Not Available | Negative | 849363 - 850439 | 39051.9 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DW921_03840 | Not Available | Negative | 850969 - 852138 | 42968.7 |
| pspc domain-containing protein | DW921_03845 | Not Available | Negative | 852201 - 853247 | 39125.4 |
| padr family transcriptional regulator | DW921_03850 | Not Available | Negative | 853253 - 853588 | 13020.9 |
| gnat family n-acetyltransferase | DW921_03855 | Not Available | Positive | 853746 - 854264 | 20161.1 |
| n-glycanase | DW921_03860 | Not Available | Negative | 854362 - 855606 | 46328.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


