Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | DW921_03765 | Not Available | Positive | 828067 - 828918 | 31215.1 |
| histidinol dehydrogenase | DW921_03770 | Not Available | Positive | 828942 - 830225 | 46795.0 |
| histidinol-phosphate transaminase | DW921_03775 | Not Available | Positive | 830229 - 831269 | 39604.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DW921_03780 | Not Available | Positive | 831280 - 832401 | 42770.1 |
| dna-binding response regulator | DW921_03785 | Not Available | Negative | 832690 - 833478 | 30393.0 |
| duf1349 domain-containing protein | DW921_03790 | Not Available | Positive | 833557 - 834207 | 25110.0 |
| dna alkylation repair protein | DW921_03795 | Not Available | Negative | 834233 - 834973 | 29115.1 |
| tolc family protein | DW921_03800 | Not Available | Negative | 835111 - 836547 | 53660.6 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW921_03805 | Not Available | Negative | 836537 - 839680 | 115586.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_03810 | Not Available | Negative | 839692 - 840840 | 43670.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


