Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-bladed beta-propeller | DW921_03715 | Not Available | Negative | 819679 - 820878 | 44973.2 |
| endonuclease | DW921_03720 | Not Available | Negative | 821137 - 822150 | 38261.3 |
| aminoacyl-histidine dipeptidase | DW921_03725 | Not Available | Negative | 822156 - 823613 | 53586.2 |
| hypothetical protein | DW921_03730 | Not Available | Positive | 823766 - 823999 | 8642.82 |
| omph family outer membrane protein | DW921_03735 | Not Available | Positive | 824026 - 824631 | 22879.4 |
| l-rhamnose mutarotase | DW921_03740 | Not Available | Positive | 824730 - 825110 | 15282.2 |
| thioredoxin | DW921_03745 | Not Available | Positive | 825186 - 825482 | 11194.8 |
| lytic transglycosylase f | DW921_03750 | Not Available | Negative | 825490 - 826869 | 51358.4 |
| uridine kinase | DW921_03755 | Not Available | Negative | 826866 - 827477 | 23265.6 |
| dabb family protein | DW921_03760 | Not Available | Positive | 827550 - 827855 | 11542.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


