Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biosynthetic-type acetolactate synthase large subunit | DW921_03610 | Not Available | Negative | 790099 - 791802 | 62166.9 |
| dihydroxy-acid dehydratase | DW921_03615 | Not Available | Negative | 791817 - 793616 | 63931.1 |
| peptidylprolyl isomerase | DW921_03620 | Not Available | Positive | 794130 - 794747 | 22184.8 |
| atpase | DW921_03625 | Not Available | Positive | 794820 - 795653 | 31097.4 |
| simpl domain-containing protein | DW921_03630 | Not Available | Positive | 795669 - 796373 | 26398.7 |
| 30s ribosomal protein s1 | DW921_03635 | Not Available | Positive | 796646 - 798433 | 66657.8 |
| na+/h+ antiporter nhac family protein | DW921_03640 | Not Available | Positive | 798568 - 799872 | 46227.9 |
| sdr family nad(p)-dependent oxidoreductase | DW921_03645 | Not Available | Positive | 799929 - 800705 | 27708.5 |
| hypothetical protein | DW921_03650 | Not Available | Positive | 800867 - 801094 | 8350.37 |
| hypothetical protein | DW921_03655 | Not Available | Positive | 801179 - 802621 | 54569.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


