Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trar/dksa family transcriptional regulator | DW921_03510 | Not Available | Negative | 765704 - 766084 | 14391.2 |
| isoleucine--trna ligase | DW921_03515 | Not Available | Negative | 766153 - 769641 | 132699.0 |
| tigr03905 family tscpd domain-containing protein | DW921_03520 | Not Available | Negative | 770092 - 770337 | 8812.77 |
| yebc/pmpr family dna-binding transcriptional regulator | DW921_03525 | Not Available | Negative | 770435 - 771166 | 27516.3 |
| hypothetical protein | DW921_03530 | Not Available | Negative | 771199 - 771429 | 8825.85 |
| phenylalanine--trna ligase subunit beta | DW921_03535 | Not Available | Negative | 771442 - 773904 | 90854.8 |
| replicative dna helicase | DW921_03540 | Not Available | Negative | 774002 - 775564 | 58006.7 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DW921_03545 | Not Available | Positive | 775816 - 776643 | 30748.1 |
| rlua family pseudouridine synthase | DW921_03550 | Not Available | Positive | 776647 - 778290 | 62680.8 |
| hypothetical protein | DW921_03555 | Not Available | Positive | 778420 - 778947 | 20221.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


