Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine/threonine protein phosphatase | DW921_03345 | Not Available | Negative | 724907 - 725716 | 31767.6 |
| hybrid sensor histidine kinase/response regulator | DW921_03355 | Not Available | Positive | 726399 - 728726 | 87152.9 |
| sigma-54-dependent fis family transcriptional regulator | DW921_03360 | Not Available | Positive | 728714 - 729886 | 43865.1 |
| duf4143 domain-containing protein | DW921_03365 | Not Available | Positive | 730689 - 732059 | 53573.2 |
| Trna-asp | Not Available | Not Available | Positive | 736460 - 736536 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 736767 - 736843 | Not Available |
| yqge/algh family protein | DW921_03390 | Not Available | Positive | 737069 - 737659 | 22249.7 |
| n-acetyltransferase | DW921_03395 | Not Available | Negative | 737648 - 738178 | 20309.2 |
| hypothetical protein | DW921_03400 | Not Available | Negative | 738181 - 738648 | 17828.5 |
| recombination protein recr | DW921_03405 | Not Available | Negative | 738663 - 739280 | 22453.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


