Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_03295 | Not Available | Negative | 713672 - 714130 | 17280.2 |
| atp-dependent clp protease atp-binding subunit | DW921_03300 | Not Available | Negative | 714191 - 716641 | 91563.6 |
| hypothetical protein | DW921_03305 | Not Available | Positive | 717041 - 717250 | 8031.99 |
| duf3737 family protein | DW921_03310 | Not Available | Positive | 717794 - 718660 | 33321.2 |
| pyridoxal phosphate-dependent aminotransferase | DW921_03315 | Not Available | Positive | 718673 - 719851 | 44360.9 |
| mate family efflux transporter | DW921_03320 | Not Available | Positive | 719856 - 721313 | 52420.9 |
| transcriptional regulator | DW921_03325 | Not Available | Positive | 721506 - 721886 | 14718.1 |
| 4fe-4s ferredoxin | DW921_03330 | Not Available | Positive | 722011 - 722772 | 27814.7 |
| cupin domain-containing protein | DW921_03335 | Not Available | Negative | 722909 - 723319 | 14841.7 |
| transcriptional regulator | DW921_03340 | Not Available | Positive | 723463 - 723834 | 14000.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


