Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW921_03090 | Not Available | Negative | 668328 - 669932 | 61220.4 |
| hlyd family secretion protein | DW921_03095 | Not Available | Negative | 669929 - 670999 | 40566.3 |
| tolc family protein | DW921_03100 | Not Available | Negative | 671033 - 672349 | 50928.1 |
| marr family transcriptional regulator | DW921_03105 | Not Available | Negative | 672330 - 672770 | 17254.1 |
| low specificity l-threonine aldolase | DW921_03110 | Not Available | Negative | 672944 - 673969 | 37783.2 |
| rna methyltransferase | DW921_03115 | Not Available | Positive | 674094 - 674942 | 30537.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW921_03120 | Not Available | Negative | 674901 - 675332 | 15792.1 |
| pyridoxamine 5'-phosphate oxidase family protein | DW921_03125 | Not Available | Positive | 675582 - 676100 | 19235.1 |
| eve domain-containing protein | DW921_03135 | Not Available | Positive | 678296 - 680755 | 96110.2 |
| 5-methylcytosine-specific restriction endonuclease system specificity protein mcrc | DW921_03140 | Not Available | Positive | 680748 - 681788 | 41099.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


