Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW921_03040 | Not Available | Positive | 654571 - 656883 | 86822.9 |
| abc transporter atp-binding protein | DW921_03045 | Not Available | Positive | 656996 - 657670 | 24849.8 |
| sel1 repeat family protein | DW921_03050 | Not Available | Positive | 657852 - 658808 | 36039.1 |
| duf2721 domain-containing protein | DW921_03055 | Not Available | Negative | 658844 - 659239 | 14934.6 |
| trna lysidine(34) synthetase tils | DW921_03060 | Not Available | Positive | 659328 - 660641 | 50087.5 |
| histone h1 | DW921_03065 | Not Available | Positive | 660789 - 660965 | 6456.86 |
| duf5113 domain-containing protein | DW921_03070 | Not Available | Positive | 661025 - 665533 | 172820.0 |
| dna-binding response regulator | DW921_03075 | Not Available | Positive | 665666 - 666388 | 27352.2 |
| abgt transporter | DW921_03080 | Not Available | Positive | 666378 - 667076 | 25999.9 |
| ahpc/tsa family protein | DW921_03085 | Not Available | Positive | 667121 - 668221 | 40425.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


