Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_02890 | Not Available | Positive | 615396 - 615998 | 21810.9 |
| hypothetical protein | DW921_02895 | Not Available | Negative | 616100 - 616345 | 9350.54 |
| pyruvate formate lyase-activating protein | DW921_02900 | Not Available | Negative | 616429 - 617157 | 27996.5 |
| formate c-acetyltransferase | DW921_02905 | Not Available | Negative | 617318 - 619540 | 83528.7 |
| sugar o-acetyltransferase | DW921_02910 | Not Available | Negative | 619810 - 620403 | 21792.1 |
| flavodoxin family protein | DW921_02915 | Not Available | Negative | 620419 - 620961 | 20035.4 |
| udp-galactopyranose mutase | DW921_02920 | Not Available | Negative | 621145 - 622275 | 43935.0 |
| hypothetical protein | DW921_02925 | Not Available | Positive | 622409 - 625411 | 111467.0 |
| tetratricopeptide repeat protein | DW921_02930 | Not Available | Negative | 625462 - 627156 | 62889.8 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DW921_02935 | Not Available | Negative | 627184 - 627936 | 27533.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


